PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00596.1.g00170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 366aa    MW: 41472.4 Da    PI: 4.7549
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00596.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35481382101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d ++++++sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+
  Zmw_sc00596.1.g00170.1.sm.mk  48 FLTKTYDMVDDLTTDHVVSWSATNNSFVVWDPHAFATVMLPRHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFA 119
                                   9********************999*****************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   ++ F +g+++ll++i+r+k
  Zmw_sc00596.1.g00170.1.sm.mk 120 NEGFLRGQRHLLKNIRRRK 138
                                   *****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-3544137IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.4E-3944137IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.2E-6244137IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3148137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-184871IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-188698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1899111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDPMLNPVKE EVSHGEGGLL GAAAGDGHGS VAAPRPMEGL QDGGPPPFLT KTYDMVDDLT  60
TDHVVSWSAT NNSFVVWDPH AFATVMLPRH FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN  120
EGFLRGQRHL LKNIRRRKPP AHNAPNQQSV SPYLEVGHFG YDAEIDRLKR DKQLLMAEVV  180
KLRQEQQNTK ANLKAMEDRL QGTEQKQQQM MAFLARVMRN PEFLKQLMSQ NEMRKELQEA  240
ISKKRRRRID QGPEDDDLGA TSSLEQGSPL LFDPPEPADF LVDGIPMDIG NSVLDPEVLA  300
RPENIDLGTS EPQQNVPQGD LNEDFWEELL NEGFAEENDN HVIEDDMNLL SEKMGYLNSD  360
SPTSRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-254613727129Heat shock factor protein 1
5d5v_B9e-254613727129Heat shock factor protein 1
5d5v_D9e-254613727129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247KKRRRR
2243248KRRRRI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955620.10.0PREDICTED: heat stress transcription factor A-2b-like
RefseqXP_012698852.10.0PREDICTED: heat stress transcription factor A-2b-like
SwissprotQ6VBB20.0HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLK3ZUH50.0K3ZUH5_SETIT; Uncharacterized protein
STRINGSi030256m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231